GSM1819236: DDX3 WT total RNA-seq rep2; Homo sapiens; RNA-Seq - SRA

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SRX1092031: GSM1819236: DDX3 WT total RNA-seq rep2; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 90.8M spots, 9.1G bases, 5.4Gb downloads

Submitted by: Gene Expression Omnibus (GEO)

Study: Total RNA profiles associated with DDX3 wild-type (WT) or R534H variant expression with or without sodium arsenite treatment [RNA-seq]

PRJNA289568 • SRP060677 • All experiments • All runs

show Abstracthide Abstract

RNA expression profiles are not significantly altered by DDX3 WT or R534H expression as well as by 45 minute exposure of cells to sodium arsenite. Overall design: Cells expressing either DDX3 WT or R534H variant were treated with or without sodium arsenite and lysed in the presence of cyclohexime. Total cellular RNAs were extracted and sequenced.

Sample: DDX3 WT total RNA-seq rep2

SAMN03855839 • SRS987654 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: Total RNAs were extracted using Zymo RNA Clean & Concentrator after depleting ribosomal RNAs with Ribo-Zero kit (EpiCentre). Libraries were prepared according to the ribosome profiling protocol (PMID: 19213877) and ARTseqTM Ribosome Profiling Kit protocol (EpiCentre).

Experiment attributes:

GEO Accession: GSM1819236

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 90.8M spots, 9.1G bases, 5.4Gb

Run	# of Spots	# of Bases	Size	Published
SRR2096983	90,793,120	9.1G	5.4Gb	2016-04-21

ID:: 1597583

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Sequence Read Archive

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