Illumina amplicon sequencing of metagenomic paired-end library 'Solex... - SRA

Links from BioSample

SRX1058009: Illumina amplicon sequencing of metagenomic paired-end library 'Solexa-171962' containing sample 'SKSTL0026'
1 ILLUMINA (Illumina MiSeq) run: 28,475 spots, 10M bases, 6.4Mb downloads

UUID: 9a5ba8e4-a92e-48ca-b257-743e26fbca9b

Design: Illumina sequencing of unclassified sequences via polymerase chain reaction

Submitted by: Broad Institute (BI)

Study: Microbiome study of the RISK cohort

PRJNA237362 • SRP040765 • All experiments • All runs

show Abstracthide Abstract

Risk Stratification and Identification of Immunogenetic and Microbial Markers of Rapid Disease Progression in Children with Crohn’s Disease.

Sample: Generic sample from unclassified sequences

SAMN03771673 • SRS960436 • All experiments • All runs

Organism: unclassified sequences

Library:

Name: Solexa-171962

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: PAIRED

Spot descriptor:

1 forward176 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithoutReference

data_type: 16S

gssr_id: 356974.0

library_type: 16S

lsid: broadinstitute.org:bsp.prod.sample:4KJG4

material_type: DNA:DNA Genomic

product_order: PDO-1569

product_part_number: P-MCV-0002

project: G40593

research_project: RP-105

root_sample_id: SM-4474J

sample_id: SM-4KJG4

work_request: 36965

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-07-18 16:44:42.0	GAPipeline	RTA1.17.28	Sequencer Application 2.2.0

Runs: 1 run, 28,475 spots, 10M bases, 6.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR2062026	28,475	10M	6.4Mb	2015-06-12

ID:: 1535018

SRA

Sequence Read Archive

Result Filters

Send to:

Links from BioSample

Supplemental Content

Related information

Recent activity