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SRX21473690: GSM7731238: MV4-11 cells, LRG2.1-sgTP53#6, LRCherry2.1-sgROSA26(Control), rep3; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 22.8M spots, 6.9G bases, 2.2Gb downloads

External Id: GSM7731238_r1
Submitted by: Luca Busino Laboratory, Cancer Biology, University of Pennsylvania
Study: CRL4-DCAF15 control of cohesin dynamics sustains cell proliferation [RNA-seq_CRISPR]
show Abstracthide Abstract
The CRL4-DCAF15 E3 ubiquitin ligase complex is targeted by the aryl-sulfonamide molecular glues, leading to neo-substrate recruitment, ubiquitination, and proteasomal degradation. However, the physiological function of DCAF15 remains unknown. Using a domain-focused genetic screening approach, we reveal DCAF15 as an acute myeloid leukemia (AML)-biased dependency. Loss of DCAF15 results in suppression of AML through compromised replication fork integrity and consequent accumulation of DNA damage. Accordingly, DCAF15 loss sensitizes AML to replication stress-inducing therapeutics. Mechanistically, we discover that DCAF15 directly interacts with the SMC1A protein of the cohesin complex and destabilizes the cohesin regulatory factors PDS5A and CDCA5. Loss of PDS5A and CDCA5 removal precludes cohesin acetylation on chromatin, resulting in uncontrolled chromatin loop extrusion, defective DNA replication, and apoptosis. Collectively, our findings uncover an endogenous, cell autonomous function of DCAF15 in sustaining AML proliferation through post-translational control of cohesin dynamics. Overall design: RNA-sequencing analysis of MV4-11 and HEL human AML cell lines 4 days after genetic knockout of DCAF15, TP53, both, or neither.
Sample: MV4-11 cells, LRG2.1-sgTP53#6, LRCherry2.1-sgROSA26(Control), rep3
SAMN37129339 • SRS18707550 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM7731238
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted from MV4-11 and HEL cells using the RNeasy Mini Kit (QIAGEN, 74104) per the manufacturer's instructions Total RNA was shipped to GENEWIZ (Azenta Life Sciences) for Standard RNA-Seq service, where polyA+ transcripts were isolated and RNA-seq library was prepared per their in-house protocols
Runs: 1 run, 22.8M spots, 6.9G bases, 2.2Gb
Run# of Spots# of BasesSizePublished
SRR2575040922,843,5886.9G2.2Gb2024-05-22

ID:
28914780

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