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SRX19994567: RNA-Seq of Lactobacillus delbrueckii ssp.bugaricus
1 ILLUMINA (Illumina MiSeq) run: 13M spots, 3.9G bases, 1.1Gb downloads

Design: lllumina seq b20h_3
Submitted by: Shandong Agricultural University
Study: Transcriptomic analysis of molecular mechanisms underlying the biodegradation of organophosphorus pesticide chlorpyrifos by Lactobacillus delbrueckii ssp. bulgaricus in skimmed milk
show Abstracthide Abstract
Bioremediation of organophosphorus pesticides in contaminated foodstuffs using probiotics has been increasingly under the spotlight in recent years, though the biodegradation mechanism and derived intermediate products remain unclear. This study aimed to help fill this knowledge gap and examined the degradation mechanism of organophosphorus pesticide, chlorpyrifos, in milk by Lactobacillus delbrueckii ssp. bulgaricus using gas chromatography-mass spectrometry (GC-MS/MS) combined with transcriptome analysis. After the strain was cultured for 20 h in the presence of chlorpyrifos, differential expressions of 383 genes were detected, including genes probably implicated during chlorpyrifos degradation such as those related to hydrolase, phosphoesterase, diphosphatase, oxidoreductase, dehydratase, as well as membrane transporters. GC-MS/MS analysis revealed the changes of secondary metabolites in L. bulgaricus during milk fermentation due to chlorpyrifos stress. 6-Methylhexahydro-2H-azepin-2-one, 2,6- dihydroxypyridine and methyl 2-aminooxy-4 methylpentanoate as intermediates, along with the proposed pathways, might be involved in chlorpyrifos biodegradation by L. bulgaricus.
Library:
Name: b20h_3
Instrument: Illumina MiSeq
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: other
Layout: PAIRED
Runs: 1 run, 13M spots, 3.9G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
SRR2419782013,007,0813.9G1.1Gb2023-04-17

ID:
27385888

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