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SRX768409: GSM1554580: AML Sample 4; Homo sapiens; RNA-Seq
2 ILLUMINA (Illumina HiSeq 2500) runs: 43.6M spots, 4.4G bases, 2.8Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Expression and Prognostic impact of LncRNAs in Acute Myeloid Leukemia
show Abstracthide Abstract
Long noncoding RNAs (lncRNAs) are transcripts longer than 200 nucleotides located within the intergenic stretches or overlapping antisense transcripts of protein coding genes. LncRNAs are involved in numerous biological roles including imprinting, epigenetic regulation, apoptosis and cell-cycle. To determine whether lncRNAs are associated with clinical features and recurrent mutations in older patients (aged =60 years) with cytogenetically normal (CN) acute myeloid leukemia (AML), we evaluated lncRNA expression in 148 untreated older CN-AML cases using a custom microarray platform. Overall design: In this study, we analyzed a large set of older CN-AML patients using custom lncRNA microarrays to investigate whether lncRNA expression is associated with clinical features, molecular abnormalities and outcome and to build a prognostic lncRNA signature that was subsequently validated using RNA sequencing. This submission represents RNA-Seq component of study.
Sample: AML Sample 4
SAMN03220476 • SRS752582 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted from patient samples using the Trizol method Total RNA (200 ng in 10 uL volume; RIN >4) was treated by Ribo-Zero Gold Subtraction reagents from TruSeq stranded total RNA (Illumina; RS-122-2201) to remove human cytoplasmic and mitochondrial rRNAs and for the subsequent construction of the RNA-seq library according to the manufacturer's instructions.
Experiment attributes:
GEO Accession: GSM1554580
Links:
External link:
Runs: 2 runs, 43.6M spots, 4.4G bases, 2.8Gb
Run# of Spots# of BasesSizePublished
SRR166321426,077,5482.6G1.7Gb2015-01-02
SRR166321517,490,5011.7G1Gb2015-01-02

ID:
1108725

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