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SRX18995149: RADseq data of Penstemon newberryi var. newberryi
1 ILLUMINA (Illumina HiSeq 2500) run: 7.1M spots, 1G bases, 329.5Mb downloads

Design: Libraries prepared with restriction enzyme PstI and 100 ng of DNA per sample (extraced from dried leaf tissues) with a modified version of the Elshire et al. (2011) protocol.
Submitted by: University of South Carolina
Study: Raw GBS sequences for Penstemon subg. Dasanthera and select outgroup species
show Abstracthide Abstract
Premise: Hybridization is increasingly being identified in the genomes of species across the tree of life, leading to a general recognition that hybridization plays an important role in the generation of species diversity. While hybridization may increase species diversity directly via the formation of new taxa through hybrid speciation, it may also act indirectly via the exchange of phenotypic and genetic variance between species, which may in turn stimulate future speciation events.Methods: Using high-throughput sequence data, we resolved phylogenetic relationships and investigated the role of hybridization as a diversification mechanism in the shrubby beardtongues (Penstemon subgenus Dasanthera), a group of North American wildflowers that has undergone a recent and rapid adaptive radiation. Specifically, we tested four hypotheses of hybrid taxon formation resulting from hybridization between P. davidsonii and P. fruticosus.Results: Species tree inference supports the monophyly of subgenus Dasanthera and elucidates relationships between taxa distributed in the Cascades and Sierra Nevada Mountains. Results also provide evidence of gene flow between P. davidsonii and P. fruticosus and support at least one hybrid origin hypothesis (P. davidsonii var. menziesii) in a region of contemporary distributional overlap. Hybridization may have also been facilitated by historical overlap in geographic distribution caused by species' responses to climatic changes during the Pleistocene.Conclusions: Our results support a history of hybridization between focal taxa in a rapidly radiating clade of plants and more broadly contribute to our growing understanding of the role of hybridization as a diversification mechanism in plants.
Sample:
SAMN32117888 • SRS16415511 • All experiments • All runs
Library:
Name: newberryi_BWS_85_1
Instrument: Illumina HiSeq 2500
Strategy: RAD-Seq
Source: GENOMIC
Selection: Restriction Digest
Layout: SINGLE
Runs: 1 run, 7.1M spots, 1G bases, 329.5Mb
Run# of Spots# of BasesSizePublished
SRR230414997,064,2711G329.5Mb2023-01-26

ID:
26144041

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