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SRX18397916: GSM6758263: Dp16; sample 4 (adult mesenteric lymph nodes); Mus musculus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 56.4M spots, 17G bases, 5Gb downloads

External Id: GSM6758263_r1
Submitted by: Pharmacology & Linda Crnic Institute for Down Syndrome, University of Colorado Anschutz Medical Campus
Study: Crnic Institute Human Trisome Project - Trisomy 21 Model Atlas: PolyA RNA-seq from adult mouse mesenteric lymph nodes
show Abstracthide Abstract
Analysis of steady-state mRNA levels in adult mouse mesenteric lymph nodes at week 17-18 from wild-type C57BL/6, Dp16, and interferon receptor dosage-normalized Dp16^2xIFNRs mice. This dataset is part of the Human Trisome Project - Trisomy 21 Model Atlas run by the Linda Crnic Institute for Down Syndrome at the University of Colorado Anschutz Medical Campus. http://www.trisome.org/ Overall design: Comparison of wild-type (n=5), Dp16 (n=6), and Dp16^2xIFNRs (n=6).
Sample: Dp16; sample 4 (adult mesenteric lymph nodes)
SAMN31891887 • SRS15881753 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM6758263
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA from tissue samples was extracted using TRIzol reagent (Invitrogen) following the manufacture's protocol. RNA quality was assessed using an Agilent 2200 TapeStation and quantified by Qubit (Life Technologies). Poly-A(+) RNA enrichment, and strand-specific library preparation were carried out using a Tecan/Nugen Universal Plus mRNA Kit. Paired-end 150 bp sequencing was carried out on an Illumina NovaSeq 6000 instrument by the University of Colorado Cancer Center Genomics Shared Resource.
Runs: 1 run, 56.4M spots, 17G bases, 5Gb
Run# of Spots# of BasesSizePublished
SRR2242845956,438,50317G5Gb2023-03-20

ID:
25422211

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