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SRX17623552: ddRAD seq of Otomys species
1 ILLUMINA (NextSeq 500) run: 5,420 spots, 1.6M bases, 779,277b downloads

Design: ddRAD with restriction enzymes EcoRI-HF and MspI
Submitted by: The Czech Academy of Science
Study: Evolution and taxonomy of Ethiopian Otomys
show Abstracthide Abstract
We perform the integrative taxonomic revision of Ethiopian Otomys by using the largest available sets of genomic and morphological data. By using genome-scale SNPs (from ddRAD sequencing of the material collected across EH) we analysed nuclear phylogeny and delimited genomic pools (= putative species) in Ethiopian Otomys. Finally, we used genetically characterized specimens, analysed their morphological variation and ecological requirements (e.g., preferred elevation and habitat). This integrative approach allowed us to improve the taxonomy of endemic Ethiopian species of Otomys and to update the knowledge of their distribution, habitat requirements and evolutionary history.
Sample:
SAMN30871363 • SRS15159015 • All experiments • All runs
Library:
Name: LAV1353_Otomys_simiensis
Instrument: NextSeq 500
Strategy: RAD-Seq
Source: GENOMIC
Selection: Restriction Digest
Layout: PAIRED
Runs: 1 run, 5,420 spots, 1.6M bases, 779,277b
Run# of Spots# of BasesSizePublished
SRR216227185,4201.6M779,277b2023-10-01

ID:
24516364

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