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SRX17147588: GSM6481394: tIMEC_RNA_1; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 27.4M spots, 1.4G bases, 687.1Mb downloads

External Id: GSM6481394_r1
Submitted by: Laboratory of Chromatin Biology and Epigenetics, CIBIO, University of Trento
Study: Oncogenic enhancers prime quiescent metastatic cells to escape NK immune surveillance by eliciting a transcriptional memory [total RNA-seq]
show Abstracthide Abstract
With this experiment, we aimed to decipher the changes in gene expression during tumour progression in a model of basal-like breast cancer, based on immortalized mammary epithelial cells (IMEC). The tumorigenic IMEC, xenograft-derived and metastasis-derived cells were used for the total RNA-seq analysis. Overall design: total RNA-seq
Sample: tIMEC_RNA_1
SAMN30409844 • SRS14719674 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM6481394
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Cells were directly lysed on plates, and tissue collected from primary lung tumours (PT) was lysed with TRIzol (Thermo Fisher cat. #15596026), and total RNAs were extracted according to the manufacturer's instructions. ontaminating genomic DNA was removed by DNase (Qiagen cat. #79254) digestion. RNA quality and concentration were assessed using the 2100 Bioanalyzer (Agilent cat. #G2939BA) and the Qubit fluorometer (Thermo Fisher cat. #Q33226), respectively. RNA-seq libraries were prepared by using the TruSeq® Stranded Total RNA (Illumina #20020596) supplemented with Illumina Ribo-Zero plus rRNA Depletion Kit (Illumina #20037135) starting from 500 ng of total RNA.Libraries were sequenced on an Illumina HiSeq 2500 with SE 50 bp.
Runs: 1 run, 27.4M spots, 1.4G bases, 687.1Mb
Run# of Spots# of BasesSizePublished
SRR2113524627,387,9991.4G687.1Mb2024-02-03

ID:
23950308

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