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SRX14975633: Antipatharia targeted capture
1 ILLUMINA (Illumina HiSeq 3000) run: 1.1M spots, 319.4M bases, 104.3Mb downloads

Design: The targeted enrichment of UCE/exon loci was carried out using the hexacoral-v2 probe design, a Hexacorallia specific bait set that was designed to maximize capture of UCE and exonic loci among hexacorals (Cowman et al. 2020). The hexacoral-v2 bait set includes 25,514 baits targeting 2,499 loci (1,132 UCE and 1,367 exon loci) (Cowman et al. 2020). The initial concentration of each extracted DNA sample was measured with a Qubit 2.0 fluorometer and sent to Arbor Biosciences (Ann Arbor, MI) for library preparation and sequencing, following details in Quattrini et al. (2018).
Submitted by: JAMES COOK UNIVERSITY
Study: Antipatharia Targeted Locus (Loci)
show Abstracthide Abstract
Blastopathes medusa gen. nov., sp. nov, is described from Kimbe Bay, Papua New Guinea, based on morphological and molecular data. Blastopathes, assigned to the Antipathidae, is a large, mythology-inspiring black coral characterized by clusters of elongate stem-like branches that extend out at their base and then curve upward. Colonies are not pinnulate and contain single branches, which could represent new branch cluster formations. Morphological and molecular (mtDNA igrN and targeted capture of nuclear loci) evidence supporting the establishment of a new genus is discussed. This is the first study to utilize the target capture of ultraconserved elements (UCEs) and exonic loci to elucidate phylogenetic relationships among black corals and to identify and place a new genus and species.
Sample: Hexapathes sp. G80122
SAMN27734877 • SRS12726022 • All experiments • All runs
Library:
Name: C2109
Instrument: Illumina HiSeq 3000
Strategy: Targeted-Capture
Source: GENOMIC
Selection: Hybrid Selection
Layout: PAIRED
Runs: 1 run, 1.1M spots, 319.4M bases, 104.3Mb
Run# of Spots# of BasesSizePublished
SRR188972121,057,553319.4M104.3Mb2022-12-07

ID:
21429945

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