RNA-Seq of Solanum pennellii LA0716 and Solanum Lycopersicum VF36 F2 ... - SRA

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SRX14526537: RNA-Seq of Solanum pennellii LA0716 and Solanum Lycopersicum VF36 F2 hybrids: Leaf of Low4
1 ILLUMINA (Illumina HiSeq 4000) run: 36.6M spots, 11G bases, 4.1Gb downloads

Design: RNA-Seq libraries were prepared using Illumina TruSeq Stranded mRNA Library Preparation kit LT from polyA+ -selected RNA samples. After quality control and quantitation, libraries were sequenced on the Illumina HiSeq 4000 150-bp x150-bp paired-end sequencing platform following manufacturer's specifications.

Submitted by: Texas A&M University

Study: Raw sequence reads of F2 population derived from the cross between Solanum lycopersicum cv. VF36 and Solanum pennellii LA0716

PRJNA818092 • SRP364972 • All experiments • All runs

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Acylsugars, specialized metabolites with defense activities, are secreted by trichomes of many solanaceous plants. We identified differentially expressed genes between high- and low-acylsugar-producing F2 plants derived from a cross between Solanum lycopersicum and S. pennellii, which produce acylsugars ~1% and ~20% of leaf dry weight, respectively.

Sample:

SAMN26816136 • SRS12324281 • All experiments • All runs

Organism: Solanum pennellii

Library:

Name: MK14

Instrument: Illumina HiSeq 4000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: Oligo-dT

Layout: PAIRED

Runs: 1 run, 36.6M spots, 11G bases, 4.1Gb

Run	# of Spots	# of Bases	Size	Published
SRR18392557	36,605,073	11G	4.1Gb	2022-10-28

ID:: 20725018

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