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SRX14467856: GSM5954545: BT3_ALBI_At_V; Anopheles albimanus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 24.9M spots, 5G bases, 2.9Gb downloads

External Id: GSM5954545_r1
Submitted by: Harvard University
Study: Transcriptome analysis of virgin and mated Anopheles gambiae and Anopheles albimanus
show Abstracthide Abstract
We custom-built a bioinformatics pipeline to search for 20E-modifying enzymes in the accessory glands of Anopheles gambiae males, searching for ecdysteroid kinases (EcK), ecdysone oxidases (EO), and ecdysteroid-phosphate phosphatases (EPP). To this end, we generated RNAseq datasets of different An. gambiae tissues dissected from virgin and mated females and males, and produced similar datasets for Anopheles albimanus, a South American species that does not synthetize and transfer ecdysteroids during mating. These analyses led to the identification of one candidate EPP and two potential EcKs (EcK1 and EcK2), which we demonstrated are involved in the activity of a male-specific oxidized ecdysteroid (3D20E). We further determined that 3D20E is specifically produced by the An. gambiae male accessory glands and is transferred to females during copulation, where it triggers a series of post-mating responses. Overall design: RNAseq datasets of different Anopheles gambiae and Anopheles albimanus tissues dissected from virgin and mated females and males. Tissues analyzed included: male accessory glands and rest of the body (for males); atria, head, spermatheca and rest of body (for females).
Sample: BT3_ALBI_At_V
SAMN26676100 • SRS12270358 • All experiments • All runs
Library:
Name: GSM5954545
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted with TRI reagent (Thermo Fisher Scientific, MA) from pools of 10–12 tissues following the manufacturer's instructions. RNA was treated with TURBO DNase (Thermo Fisher Scientific, MA), and purified with Qiagen RNeasy MinElute Cleanup Kit. Illumina TruSeq Stranded mRNA kit
Runs: 1 run, 24.9M spots, 5G bases, 2.9Gb
Run# of Spots# of BasesSizePublished
SRR1833144724,922,4445G2.9Gb2022-04-20

ID:
20643027

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