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SRX11745890: Single-cell whole-genome sequencing of Nannospalax galili : lung fibroblast
1 ILLUMINA (HiSeq X Ten) run: 371.3M spots, 111.4G bases, 32.3Gb downloads

Design: whole-genome sequencing at 30x depth
Submitted by: University of Minnesota
Study: Maintenance of genome sequence integrity in long and short-lived rodent species.
show Abstracthide Abstract
DNA mutations in somatic cells have been implicated in the causation of aging, with longer-lived species having a higher capacity to maintain genome sequence integrity than shorter-lived species. In an attempt to directly test this hypothesis, we used single-cell whole genome sequencing to analyze spontaneous and bleomycin-induced somatic mutations in lung fibroblasts of four rodent species with distinct maximum lifespans, including mouse, guinea pig, blind mole-rat, and naked mole-rat, as well as humans. All rodent data are deposited under this project. Human data are deposited separately in dbGAP.
Sample:
SAMN20741215 • SRS9773805 • All experiments • All runs
Library:
Name: BM_B_80_12
Instrument: HiSeq X Ten
Strategy: WGA
Source: GENOMIC SINGLE CELL
Selection: RANDOM PCR
Layout: PAIRED
Runs: 1 run, 371.3M spots, 111.4G bases, 32.3Gb
Run# of Spots# of BasesSizePublished
SRR15446544371,279,959111.4G32.3Gb2023-01-01

ID:
15662086

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