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SRX10654437: GSM5258573: Blank_2; Homo sapiens; miRNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 60.3M spots, 1G bases, 412.3Mb downloads

Submitted by: NCBI (GEO)
Study: MiRNA sequencing revealed differentially expressed miRNAs in MHCC97H Hepatoma Cancers Cells exosomes Co-cultured with Xanthatin
show Abstracthide Abstract
Xanthatin is a natural sesquiterpene lactone isolated in the 1960s from Xanthium strumarium L., which has significant antitumor activity in a variety of cell lines implicated in cancers. High-throughput sequencing was performed on the exosomal miRNAs, and a set of miRNAs differentially expressed in Xanthatin-treated MHCC97H cells were obtained. Overall design: Include 6 samples, 3 are exosomes of MHCC97H cell,another 3 are exosomes of MHCC97H cell co-incubated with Xanthatin.
Sample: Blank_2
SAMN18824021 • SRS8749754 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 4000
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: Cell culture supernatant was collected from the control group and the xanthatin group. Supernatant were collected by differential centrifugation (500xg at 4℃ for 5min, 2000xg at 4℃ for 30min, 10000xg at 4℃ for 60min). Filtrated with a 0.22um sterile filter, added into the ultra-high speed centrifuge tube, centrifuged at 4℃ for 70min at 120000xg and discarded the supernatant. Finally, depending on the amount of precipitation, 200-400 L of pre-cooled sterile PBS was added for resuspended suspension, which was high purity EVs. Total RNA was extracted by TRIzol reagent, and the RNA molecules in a size range of 18–30 nt were enriched by poly-acrylamide gel electrophoresis. The 3'adapters were added and the 36–44 nt RNAs were enriched. The 5'adapters were then ligated to the RNAs as well. The ligation products were reverse-transcribed by PCR amplification, and the 140–160 bp size PCR products were enriched to generate a cDNA library. The cDNA fragments were purified with PCR extraction kit, poly(A) added and ligated to Illumina sequencing adapters
Experiment attributes:
GEO Accession: GSM5258573
Links:
Runs: 1 run, 60.3M spots, 1G bases, 412.3Mb
Run# of Spots# of BasesSizePublished
SRR1429656860,257,7491G412.3Mb2024-04-22

ID:
14151439

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