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SRX9518133: Nanopore sequencing of Drosophila biarmipes: whole adult flies, pooled male and female
1 OXFORD_NANOPORE (MinION) run: 895,611 spots, 12.8G bases, 10.9Gb downloads

Design: Nanopore library was prepared using a bead-free version of the SQK-LSK109 kit protocol and sequenced on an R9.4.1 rev D flow cell. Basecalling was performed using ONT Guppy in high-accuracy mode and only reads passing the default quality filter were kept.
Submitted by: Stanford University
Study: Nanopore-based assembly of many drosophilid genomes
show Abstracthide Abstract
This work is a collaborative project aiming to broaden the scope of genomic resources for studying evolution in the model group Drosophilidae (fruit flies). Samples were obtained from a variety of sources ranging from inbred laboratory strains to wild samples. DNA was extracted from pools of flies. A Nanopore and Illumina hybrid assembly approach was taken to build the genome assemblies. Initial assemblies were generated from Nanopore sequences, polished with Nanopore reads, and finally with paired-end Illumina reads.
Sample:
SAMN16729608 • SRS7725849 • All experiments • All runs
Library:
Name: dbia_r941
Instrument: MinION
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Runs: 1 run, 895,611 spots, 12.8G bases, 10.9Gb
Run# of Spots# of BasesSizePublished
SRR13070725895,61112.8G10.9Gb2020-12-02

ID:
12437921

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