U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX9035219: GSM4753483: CARM1 knock-out cells treated with tunicamycin, replicate 1; Homo sapiens; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 23.1M spots, 1.8G bases, 690.6Mb downloads

Submitted by: NCBI (GEO)
Study: CARM1 determines endoplasmic reticulum stress response by controlling XBP1 in ovarian cancer [RNA-seq]
show Abstracthide Abstract
Cancer cells exploit adaptive responses such as endoplasmic reticulum (ER) stress to support their survival. ER stress response is mediated in part by the ER-localized transmembrane sensor IRE1a endoribonuclease and its substrate XBP1 to regulate XBP1 target gene expression. However, the mechanism that controls the IRE1a/XBP1 pathway remains poorly understood. CARM1 is an oncogene that is often overexpressed in a number of cancer types including ovarian cancer. Here we report that CARM1 determines ER stress response by controlling the IRE1a/XBP1 pathway. Genome-wide profiling revealed that CARM1 regulates XBP1 target gene expression during ER stress response. CARM1 directly interacts with XBP1. Inhibition of the IRE1a/XBP1 pathway was effective in ovarian cancer in a CARM1-dependent manner both in vitro and in vivo in orthotopic and patient-derived xenograft models. In addition, IRE1a inhibitor B-I09 synergizes with immune checkpoint blockade anti-PD1 antibody in an immunocompetent CARM1-expressing ovarian cancer model. Overall design: RNA-seq and Cut&Run in control cells and cells treated with tunicamycin (TM)
Sample: CARM1 knock-out cells treated with tunicamycin, replicate 1
SAMN15940898 • SRS7285785 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted using RNeasy mini Kit (Qiagen, 74106) and digested with DNase I (Qiagen, 79254) RNA-Seq libraries were constructed using 3'mRNA-seq Library Prep Kit (Lexogen) and sequenced with Illumina NextSeq 500 using 75 nt single read
Experiment attributes:
GEO Accession: GSM4753483
Links:
Runs: 1 run, 23.1M spots, 1.8G bases, 690.6Mb
Run# of Spots# of BasesSizePublished
SRR1254597123,071,7781.8G690.6Mb2021-08-12

ID:
11741743

Supplemental Content

Recent activity