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SRX8463990: GSM4588949: GF3_EEC; Danio rerio; RNA-Seq
2 ILLUMINA (Illumina HiSeq 4000) runs: 43.7M spots, 2.2G bases, 817.5Mb downloads

Submitted by: NCBI (GEO)
Study: Enteroendocrine cells sense bacterial tryptophan catabolites to activate enteric and vagal neuronal pathways
show Abstracthide Abstract
RNA-seq of isolated zebrafish enteroendocrine cells and other intestinal epithelium cells from germ-free (GF) and conventionalized (CV) zebrafish Overall design: CV and GF TgBAC(cldn15la:EGFP); Tg(neurod1:TagRFP) 8 dpf zebrafish larvae were used for Flow Activated Cell Sorting (FACS) to isolate zebrafish EECs and other IECs. Samples from three independent experimental replicates were performed. 250-580 EECs (n=3 for each CV and GF group) and 100 IECs (n=3 for each CV and GF group) from each experiment were used for library generation and RNA sequencing.
Sample: GF3_EEC
SAMN15092609 • SRS6765211 • All experiments • All runs
Organism: Danio rerio
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted from cell pellets using the Argencourt RNAdvance Cell V2 kit (Beckman) following the manufacturer's instructions. RNA amplification prior to library preparation had to be performed. The Clontech SMART-Seq v4 Ultra Low Input RNA Kit (Takara) was used to generate full-length cDNA. mRNA transcripts were converted into cDNA through Clontech's oligo(dT)-priming method. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM4588949
Links:
Runs: 2 runs, 43.7M spots, 2.2G bases, 817.5Mb
Run# of Spots# of BasesSizePublished
SRR1191748222,045,8021.1G409.6Mb2020-06-04
SRR1191748321,615,8671.1G407.9Mb2020-06-04

ID:
11003671

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