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SRX7699230: Potamotrygon leopoldi
1 ILLUMINA (Illumina NovaSeq 6000) run: 27.1M spots, 5.5G bases, 2.9Gb downloads

Design: Total RNA was isolated from the tissues using a bead mill and mirVana RNA isolation kit (Ambion) including DNase treatment, followed by examinations by capillary electrophoresis. Poly(A)+ RNA was isolated and primed with N6 randomized primer. After fragmentation, Illumina TruSeq adapter were ligated in a strand specific manner. Fractionation in range 200-550bp was cleaned up with the Agencurt AMPure XP kit, following analysis by capillary electrophoresis.
Submitted by: Fraunhofer Institute IME
Study: Predictive networks based on transcriptional-bioactivity data integration reveal the mode of action of stingray venoms
show Abstracthide Abstract
Animal venoms are potent drug leads, but mostly difficult to access and encountered in low quantity and purity. Modern integrative approaches could be the key to access challenging venom systems, bypassing costly traditional methods, and providing a first rough insight into their potential. Here, transcriptomic and phenotypic data from stingray venom were integrated into functional networks. These networks allow the identification of putatively interesting proteic candidates and the prediction of their mechanism of action from candidate-target interaction to the cellular response. The versatility of the integrated dataset allows the construction of multiple networks representing the mechanisms associated to toxin classes and envenomation effects as well as in interesting target systems.
Sample:
SAMN14072347 • SRS6123560 • All experiments • All runs
Library:
Name: 05_P_leopoldi_Vg_A
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 27.1M spots, 5.5G bases, 2.9Gb
Run# of Spots# of BasesSizePublished
SRR1104920427,144,3635.5G2.9Gb2020-12-08

ID:
10066992

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