WGA nifH: South Pacific from Ice edge to equator - SRA

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SRX7433907: WGA nifH: South Pacific from Ice edge to equator
1 ILLUMINA (Illumina MiSeq) run: 76,271 spots, 36.6M bases, 19.5Mb downloads

Design: The nifH gene (~359-bp), which used as a functional gene indicator of both diazotroph diversity and activity was amplified from environmental DNA extracts using a nested PCR protocol. Two sets of degenerate primers were used to target the region: for the 1st round PRC nifH3 reverse primer (5'-ATRTTRTTNGCNGCRTA-3') and nifH4 forward primer (5'-TTYTAYGGNAARGGNGG -3') are used. Then the 2nd round PCR is conducted with nifH1 forward primer (5'-TGYGAYCCNAARGCNGA-3') and nifH2 reverse primer (5'-ADNGCCATCATYTCNCC-3') (J. Zehr and Turner (2001); J. P. Zehr and McReynolds (1989).

Submitted by: CSIRO

Study: Marine metagenomes Metagenome

PRJNA385736 • SRP114822 • All experiments • All runs

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Marine amplicons from Australian marine (benthic and pelagic environments

Sample:

SAMN13671201 • SRS5879116 • All experiments • All runs

Organism: marine metagenome

Library:

Name: 102.100.100/34432

Instrument: Illumina MiSeq

Strategy: WGA

Source: GENOMIC

Selection: PCR

Layout: PAIRED

Runs: 1 run, 76,271 spots, 36.6M bases, 19.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR10759550	76,271	36.6M	19.5Mb	2019-12-24

ID:: 9725796

SRA

Sequence Read Archive

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