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SRX7573746: WGS of Low Respiractory Tract Infection related species
1 ILLUMINA (NextSeq 500) run: 1.8M spots, 504.3M bases, 180.1Mb downloads

Design: DNA was extracted using the UltraClean Microbial DNA isolation kit according to the manufacturers protocol (Mo Bio Laboratories Inc.). NGS libraries were prepared in 96 well format using NexteraXT DNA Sample Preparation Kit and NexteraXT index kit for 96 indexes (Illumina) according to the manufacturers protocol.
Submitted by: Ares Genetics
Study: Clinical Utility of Antibiotic Susceptibility Testing by Whole Genome Sequencing
show Abstracthide Abstract
Whole genome sequencing (WGS) is now routinely performed in clinical microbiology laboratories to assess isolate relatedness. With appropriately developed analytics, the same data can be used for prediction of antimicrobial susceptibility. We assessed WGS data for identification and antibiotic susceptibility testing (AST) prediction compared to matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF) identification and broth microdilution phenotypic susceptibility testing on clinical isolates.
Sample:
SAMN12251228 • SRS5538914 • All experiments • All runs
Library:
Name: AS012909
Instrument: NextSeq 500
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 1.8M spots, 504.3M bases, 180.1Mb
Run# of Spots# of BasesSizePublished
SRR109055531,774,639504.3M180.1Mb2020-02-11

ID:
9892727

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