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SRX9823484: RNA-Seq of Apis mellifera: library Apis_Aug
1 ILLUMINA (Illumina MiSeq) run: 4.1M spots, 1.8G bases, 871.5Mb downloads

Design: Lysates from 44 bees was RNAse treated (50 U Benzoase (Sigma) and 40 U RNase I (Thermo)). RNAse treatment augmented for (viral) encapsidated nucleic acids. > library constructed using TruSeq Stranded mRNAseq sample prep (without polyA selection or additional rRNA removal) (barcoded to distinguish from other samples in same lane) > 2 x 250 nt MiSeq sequencing.
Submitted by: Montana State University
Study: Metatranscriptome analysis of sympatric bee species identifies variants of bee infecting viruses, and a novel RNA virus primarily associated with Andrena
show Abstracthide Abstract
Metatranscriptome analysis of sympatric bee species identifies variants of bee infecting viruses, and a novel RNA virus primarily associated with Andrena.Samples of Apis mellifera and Andrena were each collected from 4 different co-localized sites differing in floral and forager diversity.Illumina sequencing was performed on RNA depleted total RNA libraries from pools of either virus augmented (3 samples) or non-augmented (8 samples).Sequence was filtered to remove reads aligning to Apis mellifera and previously identified non-viral sequence of the honey bee holobiome.Sequence remaining after filtering was assembled into metatranscriptomes using Trinity.
Sample: Virus augmented pool from 44 foragers; round 2
SAMN17141037 • SRS8005986 • All experiments • All runs
Organism: Apis mellifera
Library:
Name: Apis_Aug
Instrument: Illumina MiSeq
Strategy: RNA-Seq
Source: METATRANSCRIPTOMIC
Selection: RT-PCR
Layout: PAIRED
Runs: 1 run, 4.1M spots, 1.8G bases, 871.5Mb
Run# of Spots# of BasesSizePublished
SRR134046384,132,5651.8G871.5Mb2021-02-12

ID:
12870660

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