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SRX8432408: GSM4579890: X410B; Mirounga angustirostris; RNA-Seq
1 ILLUMINA (Illumina HiSeq 1500) run: 73.6M spots, 7.4G bases, 4.7Gb downloads

Submitted by: NCBI (GEO)
Study: Changes in Northern Elephant Seal Skeletal Muscle Following Thirty Days of Fasting and Reduced Activity
show Abstracthide Abstract
Northern elephant seals (NES, Mirounga angustirostris) undergo an annual molt during which they spend ~40 days fasting on land with reduced activity and lose approximately one-quarter of their body mass. Reduced activity and muscle load in stereotypic terrestrial mammalian models results in decreased muscle mass and capacity for force production and aerobic metabolism. However, the majority of lost mass in fasting female NES is from fat while muscle mass is largely preserved. Although muscle mass is preserved, potential changes to the metabolic and contractile capacity are unknown. To assess potential changes in NES skeletal muscle during molt, we collected muscle biopsies from 6 adult female NES at the beginning of the molt and after ~30 days at the end of the molt. Skeletal muscle was assessed for respiratory capacity using high resolution respirometry, and RNA was extracted to assess changes in gene expression. Despite a month of reduced activity, fasting, and weight loss, skeletal muscle respiratory capacity was preserved with no change in OXPHOS respiratory capacity. Molt was associated with 162 upregulated genes including genes favoring lipid metabolism and regulating cell cycles. We identified 172 downregulated genes including those coding for ribosomal proteins and genes associated with skeletal muscle force transduction and glucose metabolism. Following ~30 days of molt, NES skeletal muscle metabolic capacity appears largely preserved although mechanotransduction may be compromised. In the absence of exercise stimulus, fasting-induced shifts in skeletal muscle lipid metabolism may stimulate lipid signaling pathways associated with preserving the mass and metabolic capacity of slow oxidative muscle. Overall design: Skeletal muscle biopsies were taken from adult female northern elephant seals within 5 days of arrival on the beach for the annual molt. Muscle biopsies were taken again (not exclusively paired to the same animals) after an average of 34 days of molt before returning to sea. Samples were preserved in chilled RNAlater for 24 hours before freezing.
Sample: X410B
SAMN15065689 • SRS6743643 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 1500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Samples were blotted free of RNAlater, flash-frozen in liquid nitrogen and pulverized using a mortar and pestle before mechanical homogenization with a rotary tissue grinder using an RNAqueous Total RNA Isolation Kit. Poly-A plus RNA was enriched from ~0.1 ug of total RNA and used to generate libraries using the Illumina TruSeq RNA kit.
Experiment attributes:
GEO Accession: GSM4579890
Links:
Runs: 1 run, 73.6M spots, 7.4G bases, 4.7Gb
Run# of Spots# of BasesSizePublished
SRR1188469173,628,8077.4G4.7Gb2020-09-16

ID:
10966943

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