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SRX5504161: RNA-Seq of Pisum sativum: immature seeds, well-watered under limiting sulfur conditions, replicate 2
1 ILLUMINA (Illumina HiSeq 3000) run: 34.6M spots, 10.4G bases, 4Gb downloads

Design: RNA-seq libraries were prepared using the Illumina TruSeq Stranded mRNA sample prep kit according to the manufacturer's instructions (Illumina, San Diego, CA). Briefly, mRNA were selected using poly-T beads, fragmented to generate double-stranded cDNA and ligated to adapter. Eleven cycles of PCR were applied to amplify libraries. Library quality was assessed using a Fragment Analyser (Agilent Technologies, Courtaboeuf, France) and libraries were quantified by QPCR using the Kapa Library Quantification Kit (Roche, Meylan, France)
Submitted by: (INRA)
Study: Response of the pea transcriptome to sulfur-deficiency combined or not with moderate water stress
show Abstracthide Abstract
Water stress and sulfur-deficiency are two constraints increasingly faced by crops due to climate change and low-input practices. The objective was to investigate the effect of these stresses on the transcriptome of developing seeds in the grain legume pea (Pisum sativum L.). The reference genotype Cameor was chosen for this study. Sulfate was depleted at mid-vegetative stage and a moderate 9-day water stress period was imposed during the early reproductive phase, during which seed yield and quality are both established. For comparisons, control plants (well-watered, WW, in non-limiting sulfur conditions, S+) and plants subjected to individual stresses (water stress, WS, or sulfur-deficiency, S-) were grown in parallel. Developing seeds on the second flowering node, which encountered the combined stress throughout their early development (from 0 to 9 days after pollination), were harvested in the different conditions 9 days after pollination, and subjected to RNA-seq.
Sample: 102
SAMN10838907 • SRS4472706 • All experiments • All runs
Organism: Pisum sativum
Library:
Name: 102
Instrument: Illumina HiSeq 3000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 34.6M spots, 10.4G bases, 4Gb
Run# of Spots# of BasesSizePublished
SRR870972534,567,26310.4G4Gb2019-03-11

ID:
7429133

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