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SRX514271: eluc testis rna-seq
1 ILLUMINA (Illumina HiSeq 2000) run: 28.8M spots, 5.8G bases, 3.8Gb downloads

Submitted by: UNIVERSITY OF VICTORIA
Study: Esox lucius Genome sequencing and assembly
show Abstracthide Abstract
The pike (Esox lucius) is a northern hemisphere, circumpolar, fresh water species that is typically the top predator in many lakes. It is an important northern recreational fishery. Pike are morphologically diverse and highly adaptable. Despite their wide distribution, pike populations have low levels of polymorphism and divergence, indicative of a recent common ancestor. Pike often function as sentinel species to monitor pollutants in northern waters. Mitochondrial studies have shown that Escosiformes is the closest living order to Salmoniformes. Esociformes, an old lineage with fossils dating back to 70MYA, contains 10 species (pike, muskellunge and mudminnows) of which most literature concerns pike. The genome size for pike is 1.1pg and its karyotype is 2N=50 NF=50, similar to ancestral karyotypes of many teleosts (2N=48-50, FN=48-50). This compares to the much larger Atlantic salmon karyotype of 2N=56-60, NF=74 and genome size =3.1pg. Recent studies are consistent with the pike having a pre-WGD genome and being much closer to salmon than other fish species (zebrafish, medaka, fugu or stickleback).
Sample: Esox lucius testis
SAMN02724956 • SRS590680 • All experiments • All runs
Organism: Esox lucius
Library:
Name: testis
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
forward101  reverse

Runs: 1 run, 28.8M spots, 5.8G bases, 3.8Gb
Run# of Spots# of BasesSizePublished
SRR122873128,751,0155.8G3.8Gb2015-07-22

ID:
713764

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