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SRX4968732: RNA-Seq of mus musculus: Tailbud
1 ILLUMINA (Illumina HiSeq 2500) run: 61M spots, 3G bases, 1.5Gb downloads

Design: Mouse tail buds were dissected and RNA was harvested using RNeasy kit (Qiagen). RNA libraries were prepared for sequencing using TruSeq stranded mRNA sample Prep Kit and sequenced using Illumina HiSeq 2500 system to obtain 50 base single-end reads at CRG Genomics Unit (Barcelona, Spain).
Submitted by: Instituto Gulbenkian de Ciencia
Study: Tail bud progenitor activity relies on a network comprising Gdf11, Lin28 and Hox13 genes.
show Abstracthide Abstract
During the trunk to tail transition axial progenitors relocate from the epiblast to the tail bud. Here, we show that this process entails a major regulatory switch, bringing tail bud progenitors under Gdf11 signaling control. Gdf11 mutant embryos have an increased number of such progenitors that favor neural differentiation routes, resulting in a dramatic expansion of the neural tube. Moreover, inhibition of Gdf11 signaling recovers the proliferation ability of these progenitors when cultured in vitro. Tail bud progenitor growth is independent of Oct4, relying instead on Lin28 activity. Gdf11 signaling eventually activates Hox genes of paralog group 13, which halt expansion of these progenitors, at least in part by down-regulating Lin28 genes. Our results uncover a genetic network involving Gdf11, Lin28 and Hox13 genes controlling axial progenitor activity in the tail bud. Of note, Lin28 genes provide a link between gene regulation and the predominant metabolic pathway of axial progenitors.
Sample: WT1
SAMN10366012 • SRS4008158 • All experiments • All runs
Organism: Mus musculus
Library:
Name: WT1
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Runs: 1 run, 61M spots, 3G bases, 1.5Gb
Run# of Spots# of BasesSizePublished
SRR814823560,970,3883G1.5Gb2018-11-04

ID:
6698491

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