RNA-Seq of switchgrass: seedling - SRA

SRX4115026: RNA-Seq of switchgrass: seedling
1 ILLUMINA (Illumina HiSeq 2000) run: 32.9M spots, 5.9G bases, 4Gb downloads

Design: After the total RNA extraction and DNase I treatment, magnetic beads with Oligo (dT) are used to isolate mRNA. Mixed with the fragmentation buffer, the mRNA is fragmented into short fragments. Then cDNA is synthesized using the mRNA fragments as templates. Short fragments are purified and resolved with EB buffer for end reparation and single nucleotide.

Submitted by: Northwest A&F University

Study: Slow seedling establishment of switchgrass

PRJNA472697 • SRP148735 • All experiments • All runs

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Transcriptomes from rapidly established (re) and slowly established (se) seedlings of switchgrass were sequenced to identify candidate genes involved in seedling establishment.

Sample:

SAMN09241274 • SRS3330437 • All experiments • All runs

Organism: Panicum virgatum

Library:

Name: L9

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Runs: 1 run, 32.9M spots, 5.9G bases, 4Gb

Run	# of Spots	# of Bases	Size	Published
SRR7206036	32,923,077	5.9G	4Gb	2019-08-06

ID:: 5600587

SRA

Sequence Read Archive

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