RNA-Seq of Brassica napus ssp. rapifera: Leaf - SRA

SRX3544621: RNA-Seq of Brassica napus ssp. rapifera: Leaf
1 ILLUMINA (Illumina HiSeq 2000) run: 5.9M spots, 2.9G bases, 1.8Gb downloads

Design: RNA was isolated from the second young leaf, double-stranded cDNA were synthesized and then libraries were made by Illumina TruSeq DNA PCR-free; 2*250 paired-end

Submitted by: University of Missouri

Study: the origin and diversification of Brassica napus

PRJNA428769 • SRP128554 • All experiments • All runs

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Brassica napus is a worldwide multiuse crop, especially as a very important edible oil resource. It is an allopolyploid species naturally hybridized from Brassica rapa (AA=20) and Brassica oleracea (CC=19) about 7,500 years ago. Now, it mainly has three groups: B. napus subsp. oleifera, B. napus subsp. rapifera and B. napus subsp. pabularia. To study its origin and diversification, we use high-throughput RNA-seq and GSS methods sequenced hundreds of B. napus and its two parental species.

Sample:

SAMN08321324 • SRS2817746 • All experiments • All runs

Organism: Brassica napus subsp. rapifera

Library:

Name: 3040_RNA-Seq

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Runs: 1 run, 5.9M spots, 2.9G bases, 1.8Gb

Run	# of Spots	# of Bases	Size	Published
SRR6454152	5,919,068	2.9G	1.8Gb	2019-04-01

ID:: 4923213

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