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SRX306488: GSM1164130: Non-pregnant cervix tissue rep1; Cavia porcellus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 56.3M spots, 4.3G bases, 2.8Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Evidence for the independent evolution of "functional progesterone withdrawal" in primates and guinea pigs: a comparative transcriptomic study
show Abstracthide Abstract
Cervix remodeling (CRM) is a critical process in preparation for parturition. Early cervix shortening is a powerful clinical predictor of preterm birth, and thus understanding how CRM is regulated is important for the prevention of prematurity. Humans and other primates differ from most other mammals by the maintenance of high levels of systemic progesterone concentrations and thus differ dramatically from most model species. Humans have been hypothesized to perform functional progesterone withdrawal (FPW), but the mechanisms of FPW are not known. Guinea pigs are similar to humans as they also maintain high progesterone concentrations through parturition. The aim of this study is to document gene expression during pregnancy in the guinea pig uterine cervix in order to assess whether guinea pig can be used as a model for human FPW Overall design: Total RNA obtained from isolated cervical tissues from non-pregnant and two genstation stages (mid-term, and late-term but not in labor).
Sample: Non-pregnant cervix tissue rep1
SAMN02204334 • SRS445438 • All experiments • All runs
Organism: Cavia porcellus
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted using the RNeasy extraction kit (Qiagen, cat# 75142) following manufactures instructions that included an in-column DNAse digestion. Poly A RNA sselection. Quality of the RNA was then confirmed using Agilent 2100 Bioanalyzer. RNA library preparation and high-throughput sequencing were performed on an Illumina HiSeq 2000 sequencing system following the protocol recommended by Illumina for sequencing total RNA samples.  Strand-specific library prep. Sequencing was done for each biological replicates at 1 x 75bp strand specific by the Yale Center for Genome Analysis
Experiment attributes:
GEO Accession: GSM1164130
Links:
External link:
Runs: 1 run, 56.3M spots, 4.3G bases, 2.8Gb
Run# of Spots# of BasesSizePublished
SRR90172156,316,8464.3G2.8Gb2013-12-31

ID:
430057

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