U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX1865427: RNASeq of BTIRed bacteriocyte
1 ILLUMINA (Illumina HiSeq 2500) run: 75.7M spots, 18.9G bases, 6.5Gb downloads

Submitted by: University of Miami
Study: Aphididae Raw sequence reads
show Abstracthide Abstract
In this study, we investigated the relationship between gene family expansions and a symbiotic partnership aphids have with the bacterium Buchnera aphidicola. Aphids are sap-feeding insects and rely on Buchnera for nutrients, including essential amino acids. Interestingly, aphids also have experienced many gene duplications in their amino acid transporters. Amino acid transporter duplication has been hypothesized to be driven by selection for amino acid transporters to operate in symbiosis, mediating nutrient exchange between aphids and Buchnera. We used a comparative transcriptomic approach to determine when in aphid evolution the amino acid transporters duplicated and if expression in the aphid cells housing Buchnera was conserved across different aphid species. This study addresses how an organism''s natural history and ecological traits can shape its genome architecture.
Sample: BTIRed bacteriocyte
SAMN04448295 • SRS1516188 • All experiments • All runs
Organism: Myzus persicae
Library:
Name: BTIRed bacteriocyte
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: other
Layout: PAIRED
Runs: 1 run, 75.7M spots, 18.9G bases, 6.5Gb
Run# of Spots# of BasesSizePublished
SRR370330475,702,88218.9G6.5Gb2016-06-25

ID:
2661372

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...