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SRX18476967: RNA-Seq of Rhododendron delavayi : branchlet cortex
1 ILLUMINA (Illumina NovaSeq 6000) run: 22.5M spots, 6.4G bases, 2.4Gb downloads

Design: MY_5_2 is branchlet cortex of branches
Submitted by: Guizhou University
Study: Genome-wide analysis of MYB transcription factors and screening of MYBs involved in flower color formation in Rhododendron delavayi
show Abstracthide Abstract
Flower color is a vital trait of ornamental plants. Rhododendron delavayi Franch. is a famous ornamental plant species distributed in the mountain areas of southwest China with red inflorescences and young branches, but the molecular basis of its color formation is unclear. Based on the released genome of R. delavayi, in this study, 184 MYB genes were identified in its genome, including 78 1R-MYB, 101 R2R3-MYB, four 3R-MYB and one 4R-MYB; these MYBs were divided into 32 subgroups by phylogenetic analysis together with those of Arabidopsis. The members of the same subgroup had similar conserved domains and motifs, gene structures, and promoter cis-regulatory elements, indicating their relative conserved function. In addition, transcriptome analysis of spotted petals, unspotted petals, spotted throat, unspotted throat, and branchlet cortex showed significant differences in the expression levels of R2R3-MYB genes. Furthermore, weighted co-expression network analysis showed that MYBs were the most common transcription factors involved in color formation, of which seven were R2-R3MYB and three were 1R-MYB. Besides, bHLH and WD40 transcription factors, and gene glucose-flavonoid 3-O-glucosyl-transferase were also involved in the regulation of color formation in R. delavayi. The genes screened in this study provide references for the study of transcriptional regulation of flower color formation of Rhododendron delavayi.
Sample:
SAMN32011799 • SRS15950668 • All experiments • All runs
Library:
Name: MY_5_2
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 22.5M spots, 6.4G bases, 2.4Gb
Run# of Spots# of BasesSizePublished
SRR2251245122,540,1416.4G2.4Gb2022-12-02

ID:
25514793

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