Illumina sequencing of Nicotiana attenuata corollas, late - SRA

SRX1804913: Illumina sequencing of Nicotiana attenuata corollas, late
1 ILLUMINA (Illumina HiSeq 2000) run: 20.6M spots, 4.1G bases, 2.7Gb downloads

Design: Nicotiana attenuata wild type plants were germinated and grown in 1 l pots under standard glasshouse conditions as described previously [Kruegel, T., Lim, M., Gase, K., Halitschke, R. and Baldwin, I.T. (2002) Agrobacterium-mediated transformation of Nicotiana attenuata, a model ecological expression system. Chemoecology, 12, 177–183]. Corollas were harvested from early flowers of Nicotiana attenuata. Samples were collected at 6 pm (open flowers) and 9am (closed flower after opening), 4-10 samples were pooled. Total RNA was isolated and used for Illumina HiSeq library construction.

Submitted by: Max Planck Institute for Chemical Ecology

Study: Nicotiana attenuata cultivar:Utah 30x inbred Transcriptome or Gene expression

PRJNA317743 • SRP075848 • All experiments • All runs

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Nicotiana attenuata has been used to study plant-organism interactions (e.g. insect herbivores, pollinators and pathogenic microorganisms) for more than 20 years. A large amount of adaptive biochemical and morphological plasticity responses to environmental signals are known.

Sample: Plant sample (corollas, late) from Nicotiana attenuata

SAMN05182697 • SRS1470817 • All experiments • All runs

Organism: Nicotiana attenuata

Library:

Name: NA1515COL

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward51 reverse

Runs: 1 run, 20.6M spots, 4.1G bases, 2.7Gb

Run	# of Spots	# of Bases	Size	Published
SRR3597528	20,555,325	4.1G	2.7Gb	2016-08-11

ID:: 2580651

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