Illumina sequencing of Nicotiana attenuata seeds, smoked - SRA

SRX1804897: Illumina sequencing of Nicotiana attenuata seeds, smoked
1 ILLUMINA (Illumina HiSeq 2000) run: 25.7M spots, 2.6G bases, 1.7Gb downloads

Design: Nicotiana attenuata wild type plants were germinated and grown in 1 l pots under standard glasshouse conditions as described previously [Kruegel, T., Lim, M., Gase, K., Halitschke, R. and Baldwin, I.T. (2002) Agrobacterium-mediated transformation of Nicotiana attenuata, a model ecological expression system. Chemoecology, 12, 177–183]. 100 mg seeds were treated with 1:50 diluted liquid smoke solution for 9-15 min. Total RNA was isolated and used for Illumina HiSeq library construction.

Submitted by: Max Planck Institute for Chemical Ecology

Study: Nicotiana attenuata cultivar:Utah 30x inbred Transcriptome or Gene expression

PRJNA317743 • SRP075848 • All experiments • All runs

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Nicotiana attenuata has been used to study plant-organism interactions (e.g. insect herbivores, pollinators and pathogenic microorganisms) for more than 20 years. A large amount of adaptive biochemical and morphological plasticity responses to environmental signals are known.

Sample: Plant sample (seeds, smoked) from Nicotiana attenuata

SAMN05182681 • SRS1470801 • All experiments • All runs

Organism: Nicotiana attenuata

Library:

Name: NA1501SES

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward51 reverse

Runs: 1 run, 25.7M spots, 2.6G bases, 1.7Gb

Run	# of Spots	# of Bases	Size	Published
SRR3597504	25,711,640	2.6G	1.7Gb	2016-08-11

ID:: 2580635

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