U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX1500226: P. dam Phase I rep2
1 ILLUMINA (Illumina MiSeq) run: 13.8M spots, 2.1G bases, 912Mb downloads

Design: The cDNA libraries were constructed using the Illumina TruSeq RNA Sample Prep kit v2 according to the manufacturer’s protocol.
Submitted by: rutgers university
Study: Pocillopora damicornis Transcriptome or Gene expression
show Abstracthide Abstract
Reef-building corals begin as non-calcifying larvae that, upon settling, rapidly begin to accrete skeleton and a protein rich skeletal organic matrix (SOM) that attaches them to the reef. Here, we characterized the temporal expression of a suite of biomineralization genes during three stages of larval development in the reef-building coral Pocillopora damicornis: Stage I - newly released, Stage II - oral-aborally compressed, and Stage III - settled and calcifying spat. The transcriptome analysis revealed 3,882 differentially expressed genes that clustered into distinct patterns across the three developmental stages. We also identified 74 novel acidic proteins (CARPs) that are highly conserved across calcifying cnidarians, but lack detectable homologs in non-calcifying taxa. Immunolocalization supports the direct role of some CARPs in calcification. Our results give insight to the molecular basis for the developmental sequence that leads to formation of the organic scaffold of corals and the initiation of aragonite precipitation in a stony coral.
Sample:
SAMN04364639 • SRS1221751 • All experiments • All runs
Library:
Name: P. dam Phase I rep2
Instrument: Illumina MiSeq
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Spot descriptor:
forward

Runs: 1 run, 13.8M spots, 2.1G bases, 912Mb
Run# of Spots# of BasesSizePublished
SRR305186413,818,6432.1G912Mb2016-06-29

ID:
2123309

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...