U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX1424934: GSM1934680: G-10-RB; Anopheles coluzzii; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 29.9M spots, 6G bases, 3.6Gb downloads

Submitted by: NCBI (GEO)
Study: Transcriptomic differences between euryhaline and stenohaline malaria vector sibling species in response to salinity stress [set2]
show Abstracthide Abstract
We use RNA-Seq to explore the reaction norm of gene expression of larval Anopheles coluzzii and An. merus to a gradient of salinity. Overall design: After rearing in freshwater, separate pools of 18 h post-hatch larval instars of An. merus and An. coluzzii were briefly (6 h) exposed to one of six water salinities: 0%, 10%, 20%, 30%, 40%, or 50% the salinity of seawater. The last sample (G-50-RC) was split across 5 lanes for sequencing, resulting in total 10 fastq files associated with subparts G-50-RCa, G-50-RCb, G-50-RCc, G-50-RCd, G-50-RCe.
Sample: G-10-RB
SAMN04252520 • SRS1157226 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted and DNase treated TruSeq® RNA Sample Preparation kit v2 (Illumina) for construction of RNA libraries (including a polyA-selection step), following manufacturer's protocols
Experiment attributes:
GEO Accession: GSM1934680
Links:
Runs: 1 run, 29.9M spots, 6G bases, 3.6Gb
Run# of Spots# of BasesSizePublished
SRR293258429,935,5536G3.6Gb2016-03-09

ID:
2016548

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...