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SRX099595: 454 sequencing of Setaria italica EST project
1 LS454 (454 GS FLX) run: 430,173 spots, 222.6M bases, 484.2Mb downloads

Design: Titanium
Submitted by: DOE JOINT GENOME INSTITUTE (JGI)
Study: Setaria italica strain:Yugu1 Genome sequencing and assembly
show Abstracthide Abstract
Foxtail millet, <i>Setaria italica</i>, is a C4, inbreeding, panicoid crop with a small diploid genome (1C genome = 490 Mb). It is thought to be closely related to bioenergy grasses such as <i>Panicum virgatum</i> (switchgrass), <i>Pennisetum purpureum</i> (napiergrass), and <i>Pennisetum glaucum</i> (pearl millet) yet has a smaller diploid genome. Switchgrass differs from other panicoid grasses exhibiting C4 photosynthesis in the decarboxylation enzyme (NAD-malic versus NADP-malic) thus making foxtail millet important to understand this important trait. Foxtail millet is also one of the oldest domesticated crops with archeological remains from 7,500 to 7,900 years BP in northern China.
Sample: Generic sample from Setaria italica
SAMN00728655 • SRS265911 • All experiments • All runs
Organism: Setaria italica
Library:
Name: CFCC
Instrument: 454 GS FLX
Strategy: EST
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Spot descriptor:
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Runs: 1 run, 430,173 spots, 222.6M bases, 484.2Mb
Run# of Spots# of BasesSizePublished
SRR350548430,173222.6M484.2Mb2011-10-03

ID:
115417

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