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SRX329067: GSM1197620: Ribosome profiling rep2-SiYTHDF2-input-polyA C9; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 29.4M spots, 2.9G bases, 1.8Gb downloads

Submitted by: NCBI (GEO)
Study: m6A-dependent regulation of messenger RNA stability
show Abstracthide Abstract
N6-methyladenosine (m6A) is the most prevalent internal modification present in the mRNA of all higher eukaryotes. Here we present that m6A is selectively recognized by human YTH domain family (YTHDF2) protein to regulate mRNA degradation. By using crosslinking and immunoprecipitation, we have identified over 4000 substrate RNA of YTHDF2 with conserved core motif of G(m6A)C. We further estabilshed the role of YTHDF2 in RNA metabolism by a combination of ribosome profiling, RNA sequencing, m6A level quantification and cell-based imaging: the C-terminal domain of YTHDF2 selectively binds to m6A of mRNA and the N-terminal domain is responsive for localizing mRNA from translatable pool to processing body where mRNA decay occurs. Overall design: PAR-CLIP and RIP was used to identify YTHDF2 binding sites followed by ribosome profling and RNA seq to assess the consequences of YTHDF2 siRNA knock-down
Sample: Ribosome profiling rep2-SiYTHDF2-input-polyA C9
SAMN02297667 • SRS465177 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Extract by trizol, poly-dT beads pull-down Truseq small RNA sample prepration kit (illumina)
Experiment attributes:
GEO Accession: GSM1197620
Links:
Runs: 1 run, 29.4M spots, 2.9G bases, 1.8Gb
Run# of Spots# of BasesSizePublished
SRR94466129,419,5452.9G1.8Gb2015-07-22

ID:
458012

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