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SRX1614304: Pisum sativum Aragorn transcript sequencing
3 LS454 (454 GS FLX Titanium) runs: 3.1M spots, 1.7G bases, 3.4Gb downloads

Design: A sequencing library was prepared from total RNA with oligo-dT priming using protocols optimized for Roche/454 GS FLX Titanium sequencing at Indiana University (used in Nguyen et al. 2013 and others). To reduce the number of high copy transcripts, amplified dsDNA library intermediates were partially normalized using Trimmer Direct (Evrogen) protocols. Emulsion PCR and sequencing were performed according to the manufacturer (Roche/454 Life Sciences). High quality sequence reads were trimmed according to Tae et al. 2012 (doi: 10.1186/1471-2105-13-247).
Submitted by: Indiana University
Study: Pisum sativum cultivar:Aragorn Raw sequence reads
show Abstracthide Abstract
Recent advances in genome sequencing, genotyping and computational strategies have made it possible and affordable to develop expressed sequence tag (EST) libraries that contain hundreds of thousands to millions of sequences. ESTs, sequences of cDNA made by reverse transcription of mRNAs, are particularly valuable for discovering new genes, for obtaining data on gene expression and regulation, for constructing genomic maps and for the development of single nucleotide polymorphism (SNP) markers. The goal of this project is to develop a reference transcriptome of ESTs from multiple tissues/organelles and growth stages of Pisum sativum cv 'Aragorn' and develop an EST database.
Sample: Plant sample from Pisum sativum cv Aragorn
SAMN04309034 • SRS1324165 • All experiments • All runs
Organism: Pisum sativum
Library:
Name: Aragorn pea 454
Instrument: 454 GS FLX Titanium
Strategy: OTHER
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: SINGLE
Spot descriptor:
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Runs: 3 runs, 3.1M spots, 1.7G bases, 3.4Gb
Run# of Spots# of BasesSizePublished
SRR32048311,595,851875M1.8Gb2016-03-14
SRR3204832688,526373.3M787.3Mb2016-03-14
SRR3204833800,100434.6M912.8Mb2016-03-14

ID:
2306793

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