U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX22592770: GSM7911902: MIN6 cells/25mM/RPF biol rep5 [RPF 10]; Mus musculus; OTHER
1 ILLUMINA (NextSeq 500) run: 6.8M spots, 506.8M bases, 242.4Mb downloads

External Id: GSM7911902_r1
Submitted by: Bioinformatics & Biostatistics Core, Joslin Diabetes Center
Study: Sustained hyperglycemia specifically targets translation of mRNAs for insulin secretion
show Abstracthide Abstract
Pancreatic beta-cells are specialized for coupling glucose metabolism to insulin peptide production and secretion. Acute glucose exposure robustly and coordinately increases translation of proinsulin and proteins required for secretion of mature insulin peptide. By contrast, chronically elevated glucose levels that occur during diabetes impair beta-cell insulin secretion and have been shown experimentally to suppress insulin translation. Whether translation of other genes critical for insulin secretion are similarly downregulated by chronic high glucose is unknown. Here, we used high-throughput ribosome profiling and nascent proteomics in MIN6 insulinoma cells to elucidate the genome-wide impact of sustained high glucose on beta-cell mRNA translation. Prior to induction of ER stress or suppression of global translation, sustained high glucose suppressed glucose-stimulated insulin secretion and downregulated translation of not only insulin, but also of mRNAs related to insulin secretory granule formation, exocytosis, and metabolism-coupled insulin secretion. Translation of these mRNAs was also downregulated in primary rat and human islets following ex-vivo incubation with sustained high glucose and in an in vivo model of chronic mild hyperglycemia. Furthermore, translational downregulation decreased cellular abundance of these proteins. Our study uncovered a translational regulatory circuit during beta-cell glucose toxicity that impairs expression of proteins with critical roles in beta-cell function. Overall design: To determine effect of sustained high glucose on mRNA translation of pancreatic beta-cell, ribosome profiling was performed to measure mRNA translation efficiency based on the proportion of mRNA bound by the ribosome compared to total mRNA per gene. MIN6 cells were incubated in media with 5.5 mM or 25 mM glucose for 24 hours prior to ribosome profiling.
Sample: MIN6 cells/25mM/RPF biol rep5 [RPF 10]
SAMN38344855 • SRS19599372 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM7911902
Instrument: NextSeq 500
Strategy: OTHER
Source: OTHER
Selection: other
Layout: SINGLE
Construction protocol: Ribosome protected footprints (RPFs) were obtained using RNase digestion and gel-extraction, as previously described (McGlincey et al. 2017) except that 1 U/20 million cells RNase 1 (Thermo Scientific) was used. Libraries were made in two batches (samples 1-8 in one batch; 9-16 in a second batch). For RPF library, rDNA depletion was performed using biotinylated rDNA sequences to remove rRNA contamination. Input libraries were generated using polyA enrichment, and Kapa stranded mRNA Hyper Prep (Illumina). RPF and RNA libraries were sequenced using Illumina NS500 single-end 75 bp reads. Ribosome profiling under low and high glucose conditions in MIN6 cells was designed to assay mRNA translation efficiency changes under different glucose conditions
Runs: 1 run, 6.8M spots, 506.8M bases, 242.4Mb
Run# of Spots# of BasesSizePublished
SRR268985776,757,569506.8M242.4Mb2023-12-01

ID:
30594034

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...