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SRX16694915: GSM6404262: Ribo_KO_C2; Mus musculus; OTHER
1 ILLUMINA (Illumina HiSeq 4000) run: 39.3M spots, 988.6M bases, 469.2Mb downloads

External Id: GSM6404262_r1
Submitted by: National Institute for Basic Biology
Study: mRNA expression and translation regulated by the prion-like domain of Ilf3 in the mouse amygdala under chronic stress
show Abstracthide Abstract
Prion-like domain (PrLD) is a class of intrinsically disordered regions. Although its propensity to form condensates has been studied in the context of neurodegenerative diseases, the physiological role of PrLD remains unclear. Here, we investigated the physiological role of PrLD in NFAR2, generated by a splicing variant of the Ilf3 gene. Removal of the PrLD in mice affected the chronic water immersion and restraint stress (WIRS)-sensitive nuclear localization of NFAR2 in the amygdala, a fear-related brain region. Since NFAR2 regulates transcription and translation in the nucleus and cytoplasm, respectively, we investigated the effects of the PrLD deletion and WIRS on gene expression using RNA-seq and ribosome profiling. Overall design: RNA-seq and ribosome profiling in the amygdala from Ilf3+/+ and Ilf3?PrLD/?PrLD mice under WIRS and control conditions
Sample: Ribo_KO_C2
SAMN29998738 • SRS14325669 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM6404262
Instrument: Illumina HiSeq 4000
Strategy: OTHER
Source: TRANSCRIPTOMIC
Selection: other
Layout: SINGLE
Construction protocol: The amygdala was isolated from the brains of control and stressed mice and quickly frozen in liquid nitrogen. The samples were lysed in ice-cold lysis buffer. For RNA-Seq, TruSeq Stranded mRNA Library Prep Kit (Illumina) was used. For ribosome profiling, RNase I treatment, ribosome pelleting, size selection, preadenylated linker ligation, rRNA depeletion, reverse transcription, cDNA circularization, and PCR amplification were conducted.
Runs: 1 run, 39.3M spots, 988.6M bases, 469.2Mb
Run# of Spots# of BasesSizePublished
SRR2067288139,250,785988.6M469.2Mb2023-02-15

ID:
23431497

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