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SRX952416: GSM1632589: IFNg TLR replicate 1; Homo sapiens; miRNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 9.7M spots, 496.2M bases, 296.8Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: IFN-g Regulates mTORC1, Cellular Metabolism and mRNA Translation to Potentiate Inflammatory Macrophage Activation [miRNA-Seq]
show Abstracthide Abstract
IFN-g primes macrophages for enhanced inflammatory activation by TLRs and microbial killing, but little is known about the regulation of cell metabolism or mRNA translation during priming. We found that IFN-g regulates macrophage metabolism and translation in an integrated manner by targeting mTORC1 and MNK pathways that converge on the selective regulator of translation initiation eIF4E. Physiological downregulation of the central metabolic regulator mTORC1 by IFN-g was associated with autophagy and translational suppression of repressors of inflammation such as HES1. Genome-wide ribosome profiling in TLR2-stimulated macrophages revealed that IFN-g selectively modulates the macrophage translatome to promote inflammation, further reprogram metabolic pathways, and modulate protein synthesis. These results add IFN-g-mediated metabolic reprogramming and translational regulation as key components of classical inflammatory macrophage activation. Overall design: microRNA-seq libraries were generated from mock or IFN-g-primed human macrophages. Cells were stimulated with or without Pam3Cys and harvested at 4 hours Libraries were generated using Illumina Truseq small RNA technology.
Sample: IFNg TLR replicate 1
SAMN03401158 • SRS872574 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2000
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: Total RNA was extracted by using mirVana miRNA isolation kit miRNA libraries were prepared by using TruSeq small RNA library prep kit (Illumina)
Experiment attributes:
GEO Accession: GSM1632589
Links:
External link:
Runs: 1 run, 9.7M spots, 496.2M bases, 296.8Mb
Run# of Spots# of BasesSizePublished
SRR19107269,730,055496.2M296.8Mb2015-06-29

ID:
1352983

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