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SRX14712852: GSM5994112: B73, ribo-13 rep2; Zea mays; OTHER
1 ILLUMINA (Illumina NovaSeq 6000) run: 21.8M spots, 577.5M bases, 222.4Mb downloads

External Id: GSM5994112_r1
Submitted by: Huazhong Agricultural University
Study: A multi-omics integrative network map of maize.
show Abstracthide Abstract
These data include RNA-seq, circRNA-seq, and small RNA-seq of transcriptome, Ribo-seq of translatome and protein protein binary interactions by recombination-based library vs. library yeast-2-hybrid throughout the lifecycle of the maize inbred line B73. Overall design: We constructed a integrative network map involving co-expression, co-translation and interactome network.
Sample: B73, ribo-13 rep2
SAMN27178131 • SRS12475185 • All experiments • All runs
Organism: Zea mays
Library:
Name: GSM5994112
Instrument: Illumina NovaSeq 6000
Strategy: OTHER
Source: TRANSCRIPTOMIC
Selection: other
Layout: SINGLE
Construction protocol: Two replicates were prepared per tissue. RNA was extracted from 5–10 individual plants per replicate. Equal amounts of the three replicates were used for sequencing. Total RNA was isolated from the 26 tissues using a Direct-zol RNA Microprep kit (Zymo Research) following the manufacturer's guidelines. RNA libraries were prepared for sequencing using corresponding standard protocols. mRNA-Seq, circular RNA-Seq, small RNA-Seq, ribo-Seq and PacBio Sequel
Runs: 1 run, 21.8M spots, 577.5M bases, 222.4Mb
Run# of Spots# of BasesSizePublished
SRR1858424121,783,957577.5M222.4Mb2022-10-30

ID:
21052421

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