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SRX14614394: GSM5972507: SN87_WT_37_Rep1_RPF; Candida albicans; OTHER
1 ILLUMINA (NextSeq 500) run: 19M spots, 571M bases, 374.4Mb downloads

External Id: GSM5972507_r1
Submitted by: Research group for RNA Biochemistry, Department of Chemistry and Biochemistry, University of Bern
Study: Ncs2* mediates in vivo virulence of pathogenic yeast through sulphur modification of cytoplasmic transfer RNA
show Abstracthide Abstract
Fungal pathogens threaten ecosystems and human health. Understanding the molecular basis of their virulence is key to develop new treatment strategies. Here, we characterize NCS2*, a point mutation identified in a clinical baker's yeast isolate. Ncs2 is essential for 2-thiolation of tRNA and the NCS2* mutation leads to increased thiolation at body temperature. NCS2* yeast exhibits enhanced fitness when grown at elevated temperatures or when exposed to oxidative stress, inhibition of nutrient signalling, and cell-wall stress. Importantly, Ncs2* alters the interaction and stability of the thiolase complex likely mediated by nucleotide binding. The absence of 2-thiolation abrogates the in vivo virulence of pathogenic baker's yeast in infected mice. Finally, hypomodification triggers changes in colony morphology and hyphae formation in the common commensal pathogen Candida albicans resulting in decreased virulence in a human cell culture model. These findings demonstrate that 2-thiolation of tRNA acts as a key mediator of fungal virulence and reveal new mechanistic insights into the function of the highly conserved tRNA-thiolase complex. Overall design: Wild type and 2-thiolation deficient Candida albicans strains were analysed by ribosome profiling at 30 °C, 37 °C and 41 °C.
Sample: SN87_WT_37_Rep1_RPF
SAMN26947748 • SRS12382346 • All experiments • All runs
Library:
Name: GSM5972507
Instrument: NextSeq 500
Strategy: OTHER
Source: TRANSCRIPTOMIC
Selection: other
Layout: SINGLE
Construction protocol: The cells were lysed using a Freezer-Mill (SPEX SamplePrep) with the settings: 2 cycles of 2 min precooling, 2 min at 5 CPS and 1 min intermittent cooling. 10 A260 units of cleared lysates were digested with 250 U Ambion RNase I for 1 h at 22 °C and 1400 rpm agitation. The reaction was stopped by adding 15 μl SuperaseIn. Lysates were thawed in lysis buffer (20 mM Tris-HCl pH 7.4, 5 mM MgCl2, 100 mM NaCl, 1 % Triton, 2 mM DTT, 100 μg/ml CHX and clarified by two rounds of centrifugation (3 min; 4 °C; 3000 g and 5 min, 4 °C and 10000 g). Ribosome-protected footprints were purified from monosome fractions by size selection and gel extraction. Following 3' dephosphorylation these fragments were subjected to adaptor ligation, RT, circularization and PCR amplification.
Runs: 1 run, 19M spots, 571M bases, 374.4Mb
Run# of Spots# of BasesSizePublished
SRR1848281019,005,123571M374.4Mb2023-09-05

ID:
20893963

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