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SRX10606471: GSM5242699: KO1_polyribosome-bound-mRNA; Homo sapiens; RNA-Seq
1 BGISEQ (BGISEQ-500) run: 23.8M spots, 1.2G bases, 674.3Mb downloads

Submitted by: NCBI (GEO)
Study: Aberrant translation regulation by METTL1/WDR4-mediated tRNA N7-methylguanosine modification drives HNSCC progression
show Abstracthide Abstract
The cancer cells selectively promote the translation of specific oncogenic transcripts to stimulate cancer progression. Although growing evidence has revealed that tRNA modifications and related genes participate in this process, their roles in head and neck squamous cell carcinoma (HNSCC) remain largely uncharacterized. Here we found that tRNA m7G methyltransferase complex components METTL1/WDR4 were both upregulated in HNSCC and associated with poor prognosis. Functionally, METTL1/WDR4 promoted HNSCC progression and metastasis in cell-based and transgenic mouse models. Mechanistically, ablation of METTL1 reduced m7G levels of 16 tRNAs, causing translational inhibition of a subset of oncogenic transcripts, including the genes related to PI3K/AKT/mTOR signaling pathway. In addition, chemical modulators of PI3K/AKT/mTOR signaling pathway can reverse the effects of Mettl1 in HNSCC. Furthermore, single-cell RNA sequencing results revealed that depletion of Mettl1 in tumor cells altered the immune landscape and cell-cell interaction between tumor and stromal compartment. In summary, this study uncovered the physiological function and mechanism of mis-translation regulation mediated by tRNA m7G modification in HNSCC, and suggested that targeting METTL1 could be a promising treatment strategy for HNSCC patients. Overall design: TRAC-Seq were developed to identify the tRNA m7G methylome in HNSCC cell line. Polyribosome-bound-RNA-seq was used to study the differentially translated genes in the METTL1 knockout and control cells. Ribo-seq was performed to study the differentially translated genes and ribosome processivity in the METTL1 knockout and control cells. scRNA-seq of murine HNSCC from 4NQO-induced Mettl1cKO and wild type transgenic mice.
Sample: KO1_polyribosome-bound-mRNA
SAMN18747488 • SRS8707606 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: BGISEQ-500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was extracted according to TRIzol protocol. Small RNAs (<200nt) were first purified using the mirVana miRNA Isolation Kit (Thermo Fisher Scientific). HNSCC samples were harvested from the tongue of mice and single cell suspensions were prepared for 10× genomics processing. Libraries were prepared according to Illumina's instructions accompanying the TrueSeq Stranded mRNA library preparation kit, TruSeq Ribo Profile (Mammalian) Library Prep Kit and the NEBNext® Small RNA Library Prep Set. scRNA-seq libraries were prepared using Chromium Next GEM Single Cell 3' Reagent Kit v3.1 (10X Genomics) according to manufacturer's protocol.
Experiment attributes:
GEO Accession: GSM5242699
Links:
Runs: 1 run, 23.8M spots, 1.2G bases, 674.3Mb
Run# of Spots# of BasesSizePublished
SRR1424383023,807,4561.2G674.3Mb2022-03-24

ID:
14083475

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