U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX578743: GTEx Illumina RNA sequencing of transcriptome paired-end library 'Solexa-181439' containing sample 'GTEX-ZAB4-0011-R8b-SM-4SOKF' from subject 'GTEX-ZAB4'
1 ILLUMINA (Illumina HiSeq 2000) run: 42.9M spots, 6.5G bases, 2.6Gb downloads

SRX578745SRX578744SRX578742SRX578741SRX578740SRX578739SRX578738SRX578737SRX578736SRX578735SRX578734SRX578733
UUID: 993fc637-379c-40d5-ba95-5fb7a6938471
Design: Illumina sequencing of Homo sapiens via complementary DNA
Submitted by: Broad Institute (BI)
Study: Genotype-Tissue Expression (GTEx) Common Fund Project
show Abstracthide Abstract
Lay Description The aim of the Genotype-Tissue Expression (GTEx) Project is to increase our understanding of how changes in our genes affect human health and disease with the ultimate goal of improving health care for future generations. GTEx will create a database that researchers can use to study how inherited changes in genes lead to common diseases. GTEx researchers are studying genes in different tissues obtained from many different people. The GTEx project also includes a study of the GTEx donor consent process - this study will help ensure that the consent process and other aspects of the project effectively address the concerns and expectations of participants in the study. GTEx is a pioneering project that uses state-of-the-art protocols for obtaining and storing a large range... (for more see dbGaP study page.)
Sample: RNA:Total RNA sample from Brain - Hypothalamus of a human male participant in the dbGaP study "Common Fund (CF) Genotype-Tissue Expression Project (GTEx)"
SAMN02788530 • SRS629714 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: Solexa-181439
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Spot descriptor:
forward77  reverse

Experiment attributes: (show all 14 attributes...) (hide...)
analysis_type: Resequencing
data_type: RNA
gssr_id: 392186.0
library_type: cDNAShotgunStrandAgnostic
lsid: broadinstitute.org:bsp.prod.sample:4SOKF
material_type: RNA:Total RNA
product_order: PDO-1925
product_part_number: P-RNA-0002
project: G45992
research_project: RP-16
root_sample_id: SM-3V5L1
sample_id: SM-4SOKF
sample_type: Normal
work_request: 37946
Pipeline: show...hide...
NameStepProgramVersionNotes
base caller2013-09-19 20:53:58.0GAPipelineRTA1.17.20Sequencer Application 2.0.5
The SRA run(s) below contain human sequence (more...)(less...)

These data are available through the dbGaP authorized access system. Request access to:

  • Study:  phs000424
  • Consent Group: GRU

Runs: 1 run, 42.9M spots, 6.5G bases, 2.6Gb
Run# of Spots# of BasesSizePublished
SRR135563542,897,2046.5G2.6Gb2014-06-08

ID:
824068

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...