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SRX9390150: GSM4871498: RPF_Rnmt_cKO_CD4_1; Mus musculus; OTHER
4 ILLUMINA (NextSeq 500) runs: 40.9M spots, 4.6G bases, 1.7Gb downloads

Submitted by: NCBI (GEO)
Study: RNMT regulates the activated CD4 T cell transcriptome and translatome [Ribo-Seq]
show Abstracthide Abstract
We investigated the role of RNMT in T cells using an Rnmt conditional knockout mouse model. We report that the mRNA cap methyltransferase, RNMT, supports naïve T cell survival and activation-induced proliferation. We demonstrate that RNMT has gene-specific impacts in T cells, selectively regulating expression of terminal polypyrimidine tract (TOP) mRNAs which are targets of the m7G-cap binding protein LARP1. These ribosome footprinting experiments investigate the effect of Rnmt cKO on the activated CD4 T cell transcriptome and translatome. Overall design: Sequencing of rRNA-depleted RNA and ribosome protected fragments from 20 hour activated CD4 T cells from Rnmt fl/fl CD4cre (Rnmt cKO) and Rnmt fl/fl (control) mice.
Sample: RPF_Rnmt_cKO_CD4_1
SAMN16582185 • SRS7609449 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: NextSeq 500
Strategy: OTHER
Source: TRANSCRIPTOMIC
Selection: other
Layout: PAIRED
Construction protocol: Cells were lysed and the cytoplasmic RNA and ribosome protected fragment RNA prepared using the Illumina TruSeq Ribo Profile (mammalian) kit. Libraries were prepared using the Illumina TruSeq Ribo Profile (mammalian) kit.
Experiment attributes:
GEO Accession: GSM4871498
Links:
Runs: 4 runs, 40.9M spots, 4.6G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
SRR1292598210,244,8861.2G426.8Mb2021-05-13
SRR129259839,856,8641.1G412.1Mb2021-05-13
SRR1292598410,406,6191.2G433.3Mb2021-05-13
SRR1292598510,380,7331.2G429.3Mb2021-05-13

ID:
12257919

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