RNA-seq of Cucumis sativus: fruit - SRA

SRX7964235: RNA-seq of Cucumis sativus: fruit
1 ILLUMINA (HiSeq X Ten) run: 20.7M spots, 6.2G bases, 1.8Gb downloads

Design: The libraries was constructed according to the method of Qi et al. (2010). The clean reads were mapped to the reference Cucumber ChineseLongv3 Genome (http://cucurbitgenomics.org/organism/20) using Bowtie2 or Tophat (http://tophat.cbcb.umd.edu/). The fragments per kilo base of transcript per million fragments mapped (FPKM) values of each gene were calculated using Cufflinks, and the read counts of each gene were obtained by htseq-count. At least a 1.5-fold change in expression and a P-value <0.05 were set for identifying differentially expressed genes (DEGs). All DEGs were mapped to terms in the KEGG database to identify enriched pathway.

Submitted by: Yangzhou University

Study: DEGs in sugar-induced parthenocarpic fruit

PRJNA613788 • SRP253552 • All experiments • All runs

show Abstracthide Abstract

The role of sugars in parthenocarpic fruit formation

Sample:

SAMN14419952 • SRS6350179 • All experiments • All runs

Organism: Cucumis sativus

Library:

Name: Fruit-Fructose 1

Instrument: HiSeq X Ten

Strategy: RNA-Seq