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SRX1750614: GSM2146961: SSL508-28_control_0h_1; Cucumis sativus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 25.6M spots, 6.4G bases, 3.1Gb downloads

Submitted by: NCBI (GEO)
Study: Identification of candidate regulators of powdery mildew resistance in cucumber using comparative RNA-sequencing based transcriptome analysis
show Abstracthide Abstract
To investigate the candidate genes governing Pm5.1 and their effects on powdery resistance, the RNA-sequencing based transcriptomes of the powdery mildew resistant segment substitution line SSL508-28 and recurrent parent D8 were compared 48 h after inoculation with the PM pathogen. Overall design: mRNA levels of the leaves of SSL508-28 and D8 after 48 h of powdery mildew inoculation, along with uninfected control leaves from each, was generated by deep sequencing, in triplicate, using Illumina Hiseq2500
Sample: SSL508-28_control_0h_1
SAMN04962345 • SRS1428400 • All experiments • All runs
Organism: Cucumis sativus
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted using RNAiso Plus Total RNA extraction reagent (Cat#9109, TAKARA)和RNeasy Mini Kit(Cat#74106,Qiagen)following the manufacturer’s instructions and checked for a RIN number to inspect RNA integrity by an Agilent Bioanalyzer 2100 (Agilent technologies, Santa Clara, CA, US).Qualified total RNA was further purified by RNeasy micro kit (Cat#74004, QIAGEN, GmBH, Germany) and RNase-Free DNase Set (Cat#79254, QIAGEN, GmBH, Germany). RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM2146961
Links:
Runs: 1 run, 25.6M spots, 6.4G bases, 3.1Gb
Run# of Spots# of BasesSizePublished
SRR348859525,559,1926.4G3.1Gb2017-01-31

ID:
2509624

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