Illumina sequencing of cDNAs generated from mRNAs_retro_SE - SRA

DRX000670: Illumina sequencing of cDNAs generated from mRNAs_retro_SE
3 ILLUMINA (Illumina Genome Analyzer IIx) runs: 42.9M spots, 2.2G bases, 1.5Gb downloads

Design: none provided

Submitted by: National Institute of Agrobiological Sciences (Japan) (NIAS)

Study: Oryza sativa Japonica Group strain:Nipponbare Transcriptome or Gene expression

PRJDA67119 • DRP000391 • All experiments • All runs

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In order to investigate expression patterns of rice retrogenes, the transcriptome of seven tissues, callus, leaf, panicle before flowering, pannicle after flowering, root, seed, and shoot, was sequenced by Illumina sequencing (RNA-seq).

Sample: Total mRNAs from callus, leaf, panicle before flowering, panicle after flowering, root, seed, and shoot of rice (Oryza sativa ssp. Japonica cv. Nipponbare)

SAMD00008650 • DRS000668 • All experiments • All runs

Organism: Oryza sativa Japonica Group

Library:

Name: retro_SE

Instrument: Illumina Genome Analyzer IIx

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: none provided

Spot descriptor:

1 forward

Pipeline: show...hide...

Step	Prev Step	Program
1	NIL	Illumina pipeline 1.4

Runs: 3 runs, 42.9M spots, 2.2G bases, 1.5Gb

Run	# of Spots	# of Bases	Size	Published
DRR001030	16,727,653	853.1M	610.8Mb	2011-12-19
DRR001037	14,398,024	734.3M	526.1Mb	2011-12-19
DRR001044	11,732,868	598.4M	407.2Mb	2011-12-19

ID:: 128809

SRA

Sequence Read Archive

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