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SRX5324600: ddRADseq of Mangifera
1 ILLUMINA (Illumina HiSeq 2500) run: 1.4M spots, 196M bases, 85.3Mb downloads

Design: ddRAD seq performed following the protocol of Peterson et al. 2012., with modifications; enzymes used: NlaIII, MluCI; custom barcodes
Submitted by: Florida International University
Study: Mango ddRAD sequencing
show Abstracthide Abstract
We used restriction site associated DNA sequencing to generate genomic single nucleotide polymorphism (SNP) data from 106 mango cultivars from seven geographic regions along with 52 samples of closely related species and unidentified cultivars to identify centers of mango genetic diversity and examine how post-domestication dispersal shaped the geographic distribution of diversity.
SAMN10829179 • SRS4319569 • All experiments • All runs
Name: AA
Instrument: Illumina HiSeq 2500
Strategy: RAD-Seq
Selection: Reduced Representation
Layout: SINGLE
Runs: 1 run, 1.4M spots, 196M bases, 85.3Mb
Run# of Spots# of BasesSizePublished


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