U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX11476107: Whole genome sequencing of Shewanella sp. NKUCC01_JLK
1 ILLUMINA (Illumina HiSeq 2000) run: 3.3M spots, 987.3M bases, 325Mb downloads

Design: Sequencing libraries were prepared using Illumina Nextera, per the manufacturer's protocol with IDT Illumina 10 bp indices, and sequenced using an Illumina HiSeq 2000, 2 by 150 bp paired reads.
Submitted by: Northern Kentucky University
Study: Draft bacterial genomes of aquatic bacteria from an freshwater urban watershed in the Ohio River Valley
show Abstracthide Abstract
Bacteria were isolated from various aquatic habitats in Northern Kentucky that are within suburban, urban to rural locations. Organisms were isolated by serial dilution on solid medias (e.g. Tryptic Soy Agar, and Reasoner's 2A Agar), and those isolates grown at 25 degC. They were purified via quadrant streaks on TSA, and maintained the lab for several months with repeated transfers prior to DNA extractions and whole genome sequencing. The goal of this project was to identify novel environmental isolates from urbanized watersheds, and determine their biochemical and metabolic potential from their genomes.
Sample:
SAMN19515366 • SRS9516647 • All experiments • All runs
Library:
Name: ShewJLK
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 3.3M spots, 987.3M bases, 325Mb
Run# of Spots# of BasesSizePublished
SRR151687863,344,111987.3M325Mb2021-07-21

ID:
15343913

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...